This pipeline integrates a phenotypic character matrix generated from Phenoscape Knowledgebase (KB)
with a phylogeny from the Open Tree of Life.

User Input:
Two user inputs are required for the pipeline: a synthetic character matrix downloaded from Phenoscape KB and
a synthetic phylogeny downloaded from the Open Tree of Life.

Please retrieve your matrix from Phenoscape using the link below:

Phonoscape
Please upload the OntoTrace matrix (.xml):
questionmark Submit the data matrix for the desired anatomical entity retrieved from the OntoTrace


Please upload the OntoTrace metadata file (.xml) (optional):
questionmark Submit the meta-data matrix for the desired anatomical entity retrieved from the OntoTrace. Please request for the meta-data using the OntoTrace interface. This input is optional; it will enable distinguishing between inferred and asserted states for the anatomical entity when submitted (check the tutorial for more details)


Please retrieve your phylogeny from the Open Tree of Life using the link below:

Phonoscape

Please input the phylogeny (.tre):
questionmark Submit the phylogenetic tree retrieved from the Open Tree of Life